Education Information
2008 - 2011
2008 - 2011Post Doctorate
University of Illinois at Urbana-Champaign, Carl Woes Institue for Genomic Biology , United States Of America
2008 - 2008
2008 - 2008Post Doctorate
University of Connecticut, School of Medicine, United States Of America
2007 - 2008
2007 - 2008Post Doctorate
Yale University, School of Medicine, United States Of America
2001 - 2006
2001 - 2006Doctorate
North Carolina State University, Microbiology/Microbial Genomics , United States Of America
1996 - 1999
1996 - 1999Postgraduate
Iowa State University of Science and Technology, Food Biotechnology , United States Of America
1990 - 1994
1990 - 1994Undergraduate
Hacettepe University, Mühendislik Fakültesi, Gıda Mühendisliği Bölümü, Turkey
Dissertations
2006
2006Doctorate
Molecular Characterization of Listeria monocytogenes epidemic isolates
North Carolina State University
1999
1999Postgraduate
Fractionation of Transgenic Corn for Optimal Recovery of Beta-Glucuronidase
Iowa State University of Science and Technology
Research Areas
Medicine
Health Sciences
Fundamental Medical Sciences
Microbiology and Clinical Microbiology
Life Sciences
Molecular Biology and Genetics
Natural Sciences
Academic Titles / Tasks
2018 - Continues
2018 - ContinuesProfessor
Istanbul Medipol University, Uluslararası Tıp Fakültesi, Temel Tıp Bilimleri Bölümü
2014 - 2018
2014 - 2018Associate Professor
Istanbul Medipol University, Uluslararası Tıp Fakültesi, Temel Tıp Bilimleri Bölümü
2013 - 2014
2013 - 2014Associate Professor
Istanbul Medipol University, Tıp Fakültesi, Temel Tıp Bilimleri Bölümü
Managerial Experience
2014 - Continues
2014 - ContinuesHead of Department
Istanbul Medipol University
2014 - 2020
2014 - 2020Vice Dean
Istanbul Medipol University
Courses
Supervised Theses
2022
2022Doctorate
Parkinson demansında bellek ve mikrobiyota ilişkisi
Lütfü H. (Co-Advisor), Süleyman Y. (Co-Advisor)
T.KAHRAMAN(Student)
2022
2022Postgraduate
Metaproteomic analysis of saliva samples from parkinson's disease patients with cognitive impairments
Süleyman Y. (Advisor)
B.KURBEH(Student)
2019
2019Postgraduate
Repetatif manyetik stimulasyon (rTMS) frekans ve uygulama bölge farklılıklarının sağlıklı farelerin kilo değişimi ve mikrobiyotası üzerine etkileri
Süleyman Y. (Advisor)
N.DAMLA(Student)
2019
2019Postgraduate
Aksolot kol rejenerasyonunda fungus ve bakteri profillerinin boylamsal değişimlerinin incelenmesi
Süleyman Y. (Advisor)
K.HANNE(Student)
2018
2018Postgraduate
Alzheimer hastalığında davranışsal semptomlar ve mikrobiyota ilişkisi
Süleyman Y. (Co-Advisor), Lütfü H. (Co-Advisor)
F.BETÜL(Student)
2018
2018Postgraduate
Lentiviral mertk üretimi, çoğaltılması ve iletimi
Süleyman Y. (Advisor)
A.GÜNER(Student)
2018
2018Postgraduate
Ramazan orucunun prediyabet hastalarının metabolik parametreleri ve mikrobiyota değişimleri üzerine etkisi
Süleyman Y. (Advisor)
F.KOÇ(Student)
Published journal articles indexed by SCI, SSCI, and AHCI
2024
2024Temporal microbiome changes in axolotl limb regeneration: Stage-specific restructuring of bacterial and fungal communities with a Flavobacterium bloom during blastema proliferation
Altın H., Delice B., Yıldırım B., Demircan T., YILDIRIM S.
Wound Repair and Regeneration
, vol.32, no.6, pp.826-839, 2024 (SCI-Expanded)
2024
2024Parietal memory network and memory encoding versus retrieval impairments in PD-MCI patients: A hippocampal volume and cortical thickness study
Sahin S., Velioğlu H. A., Yulug B., Bayraktaroğlu Z., Yıldırım S., Hanoğlu L.
CNS Neuroscience and Therapeutics
, vol.30, no.10, 2024 (SCI-Expanded)
2024
2024Investigation of the Relationship Between Akkermansia Genomic Diversity in Gut Microbiota and Parkinson's Disease Dementia Parkinson Hastalığı Demansı ile Bağırsak Mikrobiyotasındaki Akkermansia Genomik Çeşitliliği Arasındaki İlişkinin İncelenmesi
ARIKAN M., Kahraman Demir T., Yıldız Z., HELVACI YILMAZ N., Şen A., HANOĞLU L., et al.
Mikrobiyoloji bulteni
, vol.58, no.1, pp.13-28, 2024 (SCI-Expanded)
2024
2024Functional neural networks stratify Parkinson's disease patients across the spectrum of cognitive impairment
HAJEBRAHIMI F., BUDAK M., SARICAOĞLU M., Temel Z., Demir T. K., HANOĞLU L., et al.
Brain and Behavior
, vol.14, no.1, 2024 (SCI-Expanded)
2023
2023Metaproteogenomic analysis of saliva samples from Parkinson’s disease patients with cognitive impairment
ARIKAN M., Demir T. K., Yıldız Z., NALBANTOĞLU Ö. U., Korkmaz N. D., YILMAZ N. C., et al.
npj Biofilms and Microbiomes
, vol.9, no.1, 2023 (SCI-Expanded)
2023
2023Differentiation of claustrum resting-state functional connectivity in healthy aging, Alzheimer's disease, and Parkinson's disease
Ayyildiz S., Velioglu H. A., Ayyildiz B., Sütçübaşı B., Hanoğlu L., Bayraktaroğlu Z., et al.
Human Brain Mapping
, vol.44, no.4, pp.1741-1750, 2023 (SCI-Expanded)
2022
2022Axillary Microbiota Is Associated with Cognitive Impairment in Parkinson's Disease Patients
ARIKAN M., Yildiz Z., Demir T. K., YILMAZ N. C., Sen A., HANOĞLU L., et al.
Microbiology Spectrum
, vol.10, no.1, 2022 (SCI-Expanded)
2022
2022Stratification of the Gut Microbiota Composition Landscape across the Alzheimer's Disease Continuum in a Turkish Cohort
YILDIRIM S., NALBANTOĞLU Ö. U., Bayraktar A., Ercan F. B., GÜNDOĞDU A., Velioglu l. A., et al.
mSystems
, vol.7, no.1, 2022 (SCI-Expanded)
2020
2020Urinary microbiome in uncomplicated and interstitial cystitis: is there any similarity?
YILDIRIM S., Shoskes D., Kulkarni S., Laguna P.
World Journal of Urology
, vol.38, no.11, pp.2721-2731, 2020 (SCI-Expanded)
2018
2018Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Demircan T., Ovezmyradov G., Yıldırım B., KESKİN İ., İlhan A. E., Fesçioğlu E. C., et al.
Scientific Reports
, vol.8, no.1, 2018 (SCI-Expanded)
2016
2016Association of enteric protist blastocystis spp. And gut microbiota with hepatic encephalopathy
Yildiz S., Dogan I., DOĞRUMAN AL F., Nalbantoğlu U., Üstek D., Sarzhanov F., et al.
Journal of Gastrointestinal and Liver Diseases
, vol.25, no.4, pp.489-497, 2016 (SCI-Expanded)
2016
2016Evaluation of Parameters for High Efficiency Transformation of Acinetobacter baumannii
Yildirim S., Thompson M. G., Jacobs A. C., Zurawski D. V., Kirkup B. C.
Scientific Reports
, vol.6, 2016 (SCI-Expanded)
2014
2014Validation of a novel murine wound model of Acinetobacter baumannii infection
Thompson M. G., Black C. C., Pavlicek R. L., Honnold C. L., Wise M. C., Alamneh Y. A., et al.
Antimicrobial Agents and Chemotherapy
, vol.58, no.3, pp.1332-1342, 2014 (SCI-Expanded)
2014
2014Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance
Yildirim S., Yeoman C. J., Janga S. C., Thomas S. M., Ho M., Leigh S. R., et al.
ISME Journal
, vol.8, no.12, pp.2431-2444, 2014 (SCI-Expanded)
2013
2013Pilus gene pool variation and the virulence of Corynebacterium diphtheriae clinical isolates during infection of a nematode
Broadway M. M., Rogers E. A., Chang C., Huang I., Dwivedi P., Yildirim S., et al.
Journal of Bacteriology
, vol.195, no.16, pp.3774-3783, 2013 (SCI-Expanded)
2013
2013Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
Amato K. R., Yeoman C. J., Kent A., Righini N., Carbonero F., Estrada A., et al.
ISME Journal
, vol.7, no.7, pp.1344-1353, 2013 (SCI-Expanded)
2013
2013The primate vaginal microbiome: comparative context and implications for human health and disease.
Stumpf R. M., Wilson B. A., Rivera A., Yildirim S., Yeoman C. J., Polk J. D., et al.
American journal of physical anthropology
, vol.152 Suppl 57, pp.119-134, 2013 (SCI-Expanded)
2012
2012Heavy metal and disinfectant resistance of Listeria monocytogenes from foods and food processing plants
Ratani S. S., Siletzky R. M., Dutta V., Yildirim S., Osborne J. A., Lin W., et al.
Applied and Environmental Microbiology
, vol.78, no.19, pp.6938-6945, 2012 (SCI-Expanded)
2011
2011Towards an evolutionary model of animal-associated microbiomes
Yeoman C. J., Chia N., Yildirim S., Berg Miller M. E., Kent A., Stumpf R., et al.
Entropy
, vol.13, no.3, pp.570-594, 2011 (SCI-Expanded)
2010
2010Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities
Yildirim S., Yeoman C. J., Sipos M., Torralba M., Wilson B. A., Goldberg T. L., et al.
PLoS ONE
, vol.5, no.11, 2010 (SCI-Expanded)
2010
2010Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential
Yeoman C. J., Yildirim S., Thomas S. M., Durkin A. S., Torralba M., Sutton G., et al.
PLoS ONE
, vol.5, no.8, 2010 (SCI-Expanded)
2010
2010Conservation of genomic localization and sequence content of Sau3AI-like restriction-modification gene cassettes among listeria monocytogenes epidemic clone I and selected strains of serotype 1/2a
Yildirim S., Elhanafi D., Lin W., Hitchins A. D., Siletzky R. M., Kathariou S.
Applied and Environmental Microbiology
, vol.76, no.16, pp.5577-5584, 2010 (SCI-Expanded)
2004
2004Epidemic clone I-specific genetic markers in strains of Listeria monocytogenes serotype 4b from foods
Yildirim S., Lin W., Hitchins A. D., Jaykus L., Altermann E., Klaenhammer T. R., et al.
Applied and Environmental Microbiology
, vol.70, no.7, pp.4158-4164, 2004 (SCI-Expanded)
2004
2004Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island 1 genes
Johnson J., Jinneman K., Stelma G., Smith B., Lye D., Messer J., et al.
Applied and Environmental Microbiology
, vol.70, no.7, pp.4256-4266, 2004 (SCI-Expanded)
Articles Published in Other Journals
2014
2014